Browse entries in the PDBbind-CN Database

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Related entries of code: 5a69
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5a6aRCSB PDB    PDBbind649aa, >5A6A_1|Chains... at 100%
5a6bRCSB PDB    PDBbind648aa, >5A6B_2|Chain... at 99%
5a6kRCSB PDB    PDBbind649aa, >5A6K_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3suuRCSB PDB    PDBbindOGN

Entry Information
PDB ID5a69
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameGlycoside hydrolase family 20 C
Ligand NameOGN
EC.Number E.C.-.-.-.-
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)Ki=1.1nM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) J. Biol. Chem. Vol. 290: pp. 30888-30900
Ligand Properties
Formula C15H20N3O7
Molecular Weight 354.335
Exact Mass 354.130
No. of atoms 45
No. of bonds 46
Polar Surface Area 150.8
LOGP Value -0.44      (Computed with XLOGP3)
-1.67      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A0A0H2US73  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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