Browse entries in the PDBbind-CN Database

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Related entries of code: 5c4k
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4dfbRCSB PDB    PDBbind322aa, >4DFB_1|Chains... *
4dfuRCSB PDB    PDBbind322aa, >4DFU_1|Chains... at 100%
5c4lRCSB PDB    PDBbind321aa, >5C4L_1|Chains... at 97%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1njjRCSB PDB    PDBbindGET

Entry Information
PDB ID5c4k
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameAminoglycoside phosphotransferases
Ligand NameGET
EC.Number E.C.-.-.-.-
Resolution 3.05(Å)
Affinity (Kd/Ki/IC50)Kd=27.5uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Biochim.Biophys.Acta Vol. 1860: pp. 802-813
Ligand Properties
Formula C20H44N4O10
Molecular Weight 500.584
Exact Mass 500.306
No. of atoms 78
No. of bonds 80
Polar Surface Area 257.83
LOGP Value -5.75      (Computed with XLOGP3)
-8.79      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 10
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 12
No. of Nitrogen and Oxygen Atoms: 14
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O68183  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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