Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5d75
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1pbkRCSB PDB    PDBbind116aa, >1PBK_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1fkfRCSB PDB    PDBbindFK5
3ihzRCSB PDB    PDBbindFK5
4nnrRCSB PDB    PDBbindFK5

Entry Information
PDB ID5d75
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHuman FKBD25
Ligand NameFK5
EC.Number E.C.5.2.1.8
Resolution 1.83(Å)
Affinity (Kd/Ki/IC50)Ki=200nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Protein Sci. Vol. 25: pp. 905-910
Ligand Properties
Formula C44H69NO12
Molecular Weight 804.018
Exact Mass 803.482
No. of atoms 126
No. of bonds 129
Polar Surface Area 178.36
LOGP Value 4.68      (Computed with XLOGP3)
4.58      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 13
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q00688  
Entrez Gene IDNCBI Entrez Gene ID: 2287  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com