Browse entries in the PDBbind-CN Database

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Related entries of code: 5d9k
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3ubdRCSB PDB    PDBbind304aa, >3UBD_1|Chain... at 99%
4el9RCSB PDB    PDBbind305aa, >4EL9_1|Chain... at 98%
4gueRCSB PDB    PDBbind305aa, >4GUE_1|Chain... at 98%
4nusRCSB PDB    PDBbind323aa, >4NUS_1|Chain... at 100%
4nw5RCSB PDB    PDBbind323aa, >4NW5_1|Chain... at 100%
4nw6RCSB PDB    PDBbind323aa, >4NW6_1|Chain... at 100%
5d9lRCSB PDB    PDBbind323aa, >5D9L_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5wikRCSB PDB    PDBbind584

Entry Information
PDB ID5d9k
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameRsk2 N-terminal Kinase
Ligand Name584
EC.Number E.C.2.7.11.1
Resolution 2.55(Å)
Affinity (Kd/Ki/IC50)IC50=0.004uM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) J.Med.Chem. Vol. 58: pp. 6766-6783
Ligand Properties
Formula C19H23F2N5O2
Molecular Weight 391.415
Exact Mass 391.182
No. of atoms 51
No. of bonds 53
Polar Surface Area 81.59
LOGP Value 3.63      (Computed with XLOGP3)
3.62      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P51812  
Entrez Gene IDNCBI Entrez Gene ID: 6197  
ASDInformation of known allosteric effects of PDB entries

 
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