Browse entries in the PDBbind-CN Database

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Related entries of code: 5dpx
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2fu8RCSB PDB    PDBbind269aa, >2FU8_1|Chains... at 100%
2gfjRCSB PDB    PDBbind269aa, >2GFJ_1|Chains... at 100%
2gfkRCSB PDB    PDBbind269aa, >2GFK_1|Chains... at 100%
2hb9RCSB PDB    PDBbind269aa, >2HB9_1|Chain... at 100%
2qdtRCSB PDB    PDBbind269aa, >2QDT_1|Chain... at 100%
5evbRCSB PDB    PDBbind271aa, >5EVB_1|Chain... *
5evdRCSB PDB    PDBbind271aa, >5EVD_1|Chain... at 100%
5evkRCSB PDB    PDBbind271aa, >5EVK_1|Chain... at 100%
5hh6RCSB PDB    PDBbind271aa, >5HH6_1|Chain... at 100%
5hh5RCSB PDB    PDBbind271aa, >5HH5_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5dpx
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameMetallo-beta-lactamase L1 type 3
Ligand NameL3B
EC.Number E.C.-.-.-.-
Resolution 1.85(Å)
Affinity (Kd/Ki/IC50)Ki=35uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) ChemMedChem Vol. 12: pp. 972-985
Ligand Properties
Formula C9H9N3S
Molecular Weight 191.253
Exact Mass 191.052
No. of atoms 22
No. of bonds 23
Polar Surface Area 80.37
LOGP Value 2.50      (Computed with XLOGP3)
2.07      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P52700  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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