Browse entries in the PDBbind-CN Database

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Related entries of code: 5e2l
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2ypoRCSB PDB    PDBbind462aa, >2YPO_1|Chains... at 100%
2yppRCSB PDB    PDBbind462aa, >2YPP_1|Chains... at 100%
3pfpRCSB PDB    PDBbind464aa, >3PFP_1|Chains... at 99%
3rziRCSB PDB    PDBbind462aa, >3RZI_1|Chains... at 100%
5e5gRCSB PDB    PDBbind464aa, >5E5G_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5e2l
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Name3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (MtuDAH7PS)
Ligand NameDPN
EC.Number E.C.2.5.1.54
Resolution 2.5(Å)
Affinity (Kd/Ki/IC50)Kd=93uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Plos One Vol. 11: pp. e0152723-e0152723
Ligand Properties
Formula C9H12NO2
Molecular Weight 166.197
Exact Mass 166.087
No. of atoms 24
No. of bonds 24
Polar Surface Area 64.94
LOGP Value -0.53      (Computed with XLOGP3)
-0.08      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O53512  
Entrez Gene IDNCBI Entrez Gene ID: 888309  
ASDInformation of known allosteric effects of PDB entries

 
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