Browse entries in the PDBbind-CN Database

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Related entries of code: 5evd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2fu8RCSB PDB    PDBbind269aa, >2FU8_1|Chains... at 100%
2gfjRCSB PDB    PDBbind269aa, >2GFJ_1|Chains... at 100%
2gfkRCSB PDB    PDBbind269aa, >2GFK_1|Chains... at 100%
2hb9RCSB PDB    PDBbind269aa, >2HB9_1|Chain... at 100%
2qdtRCSB PDB    PDBbind269aa, >2QDT_1|Chain... at 100%
5dpxRCSB PDB    PDBbind269aa, >5DPX_1|Chains... at 100%
5evbRCSB PDB    PDBbind271aa, >5EVB_1|Chain... *
5evkRCSB PDB    PDBbind271aa, >5EVK_1|Chain... at 100%
5hh6RCSB PDB    PDBbind271aa, >5HH6_1|Chain... at 100%
5hh5RCSB PDB    PDBbind271aa, >5HH5_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5evd
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namemetallo-beta-lactamase L1
Ligand NameVC2
EC.Number E.C.3.5.2.6
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Ki=10uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Proc.Natl.Acad.Sci.USA Vol. 113: pp. E3745-E3754
Ligand Properties
Formula C9H16NO2S3
Molecular Weight 266.424
Exact Mass 266.034
No. of atoms 31
No. of bonds 32
Polar Surface Area 131.14
LOGP Value 0.58      (Computed with XLOGP3)
1.75      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P52700  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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