Browse entries in the PDBbind-CN Database

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Related entries of code: 5ey4
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3iucRCSB PDB    PDBbind408aa, >3IUC_1|Chains... *
3ldpRCSB PDB    PDBbind384aa, >3LDP_1|Chains... at 99%
5evzRCSB PDB    PDBbind400aa, >5EVZ_1|Chains... at 99%
5exwRCSB PDB    PDBbind400aa, >5EXW_1|Chains... at 99%
5f1xRCSB PDB    PDBbind400aa, >5F1X_1|Chains... at 99%
5f2rRCSB PDB    PDBbind400aa, >5F2R_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1h7aRCSB PDB    PDBbindDTP
5im3RCSB PDB    PDBbindDTP
5olkRCSB PDB    PDBbindDTP
6jonRCSB PDB    PDBbindDTP
6iplRCSB PDB    PDBbindDTP
6iphRCSB PDB    PDBbindDTP

Entry Information
PDB ID5ey4
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namehuman GRP78 (70kDa heat shock protein 5 / BIP) ATPase domain
Ligand NameDTP
EC.Number E.C.-.-.-.-
Resolution 1.86(Å)
Affinity (Kd/Ki/IC50)Kd=750uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Plos One Vol. 11: pp. e0154862-e0154862
Ligand Properties
Formula C10H19N5O12P3
Molecular Weight 494.205
Exact Mass 494.024
No. of atoms 49
No. of bonds 51
Polar Surface Area 309.15
LOGP Value -5.09      (Computed with XLOGP3)
-1.33      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 11
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 17
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P11021  
Entrez Gene IDNCBI Entrez Gene ID: 3309  
ASDInformation of known allosteric effects of PDB entries

 
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