Browse entries in the PDBbind-CN Database

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Related entries of code: 5g57
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5g2bRCSB PDB    PDBbind360aa, >5G2B_1|Chains... *
5g5vRCSB PDB    PDBbind360aa, >5G5V_1|Chains... at 100%
5l8cRCSB PDB    PDBbind360aa, >5L8C_1|Chains... at 100%
5l8yRCSB PDB    PDBbind360aa, >5L8Y_1|Chains... at 100%
5l9hRCSB PDB    PDBbind360aa, >5L9H_1|Chains... at 100%
6rfwRCSB PDB    PDBbind360aa, >6RFW_1|Chains... at 100%
6rfnRCSB PDB    PDBbind360aa, >6RFN_1|Chains... at 100%
6gxqRCSB PDB    PDBbind360aa, >6GXQ_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5laqRCSB PDB    PDBbind6M5

Entry Information
PDB ID5g57
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameCLASS 1 PHOSPHODIESTERASE PDEB1
Ligand Name6M5
EC.Number E.C.3.1.4.-
Resolution 1.73(Å)
Affinity (Kd/Ki/IC50)Ki=3.98nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2018) J. Med. Chem. Vol. 61: pp. 3870-3888
Ligand Properties
Formula C33H40N6O4
Molecular Weight 584.708
Exact Mass 584.311
No. of atoms 83
No. of bonds 88
Polar Surface Area 114.82
LOGP Value 6.29      (Computed with XLOGP3)
5.34      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 6
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8WQX9  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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