Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5hn0
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2j7wRCSB PDB    PDBbind635aa, >2J7W_1|Chain... at 98%
3p8zRCSB PDB    PDBbind267aa, >3P8Z_1|Chains... at 96%
3vwsRCSB PDB    PDBbind635aa, >3VWS_1|Chain... at 98%
4ctjRCSB PDB    PDBbind276aa, >4CTJ_1|Chains... at 98%
4ctkRCSB PDB    PDBbind276aa, >4CTK_1|Chains... at 98%
5cuqRCSB PDB    PDBbind267aa, >5CUQ_1|Chains... at 96%
5ehgRCSB PDB    PDBbind276aa, >5EHG_1|Chains... at 98%
5ehiRCSB PDB    PDBbind276aa, >5EHI_1|Chains... at 98%
5eifRCSB PDB    PDBbind276aa, >5EIF_1|Chains... at 98%
5eiwRCSB PDB    PDBbind276aa, >5EIW_1|Chains... at 98%
5ekxRCSB PDB    PDBbind276aa, >5EKX_1|Chains... at 98%
5f3tRCSB PDB    PDBbind635aa, >5F3T_1|Chain... at 98%
5f3zRCSB PDB    PDBbind635aa, >5F3Z_1|Chain... at 98%
5f41RCSB PDB    PDBbind635aa, >5F41_1|Chain... at 98%
5hmyRCSB PDB    PDBbind635aa, >5HMY_1|Chain... at 98%
5iq6RCSB PDB    PDBbind628aa, >5IQ6_1|Chain... at 99%
5jjrRCSB PDB    PDBbind892aa, >5JJR_1|Chain... *
5jjsRCSB PDB    PDBbind892aa, >5JJS_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5hn0
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDengue serotype 3 RNA-dependent RNA polymerase NS5
Ligand NameLNN
EC.Number E.C.2.7.7.48
Resolution 2.05(Å)
Affinity (Kd/Ki/IC50)Kd>200uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) J.Med.Chem. Vol. 59: pp. 3935-3952
Ligand Properties
Formula C14H12O3
Molecular Weight 228.243
Exact Mass 228.079
No. of atoms 29
No. of bonds 30
Polar Surface Area 57.53
LOGP Value 4.10      (Computed with XLOGP3)
2.69      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q6YMS4  
Entrez Gene IDNCBI Entrez Gene ID: 5075727  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com