Browse entries in the PDBbind-CN Database

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Related entries of code: 5i12
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2ovxRCSB PDB    PDBbind159aa, >2OVX_1|Chains... at 99%
2ovzRCSB PDB    PDBbind159aa, >2OVZ_1|Chains... at 99%
2ow0RCSB PDB    PDBbind159aa, >2OW0_1|Chains... at 99%
2ow1RCSB PDB    PDBbind159aa, >2OW1_1|Chains... at 99%
2ow2RCSB PDB    PDBbind159aa, >2OW2_1|Chains... at 99%
4wzvRCSB PDB    PDBbind160aa, >4WZV_1|Chains... at 99%
4xctRCSB PDB    PDBbind157aa, >4XCT_1|Chain... at 99%
5cuhRCSB PDB    PDBbind164aa, >5CUH_1|Chains... at 98%
5ue4RCSB PDB    PDBbind236aa, >5UE4_1|Chains... *
6esmRCSB PDB    PDBbind160aa, >6ESM_1|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5i0lRCSB PDB    PDBbindH27

Entry Information
PDB ID5i12
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namecatalytic domain of Matrix metalloproteinase-9 (MMP-9)
Ligand NameH27
EC.Number E.C.3.4.24.65
Resolution 1.59(Å)
Affinity (Kd/Ki/IC50)IC50=1200nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Chemmedchem Vol. 11: pp. 1-13
Ligand Properties
Formula C34H44N4O12S2
Molecular Weight 764.863
Exact Mass 764.240
No. of atoms 96
No. of bonds 98
Polar Surface Area 256.44
LOGP Value 3.32      (Computed with XLOGP3)
3.83      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 20
No. of Nitrogen and Oxygen Atoms: 16
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P14780  
Entrez Gene IDNCBI Entrez Gene ID: 4318  
ASDInformation of known allosteric effects of PDB entries

 
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