Browse entries in the PDBbind-CN Database

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Related entries of code: 5ix0
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3maxRCSB PDB    PDBbind367aa, >3MAX_1|Chains... at 93%
4lxzRCSB PDB    PDBbind369aa, >4LXZ_1|Chains... at 93%
4ly1RCSB PDB    PDBbind369aa, >4LY1_1|Chains... at 93%
5iwgRCSB PDB    PDBbind368aa, >5IWG_1|Chains... at 93%
6g3oRCSB PDB    PDBbind370aa, >6G3O_1|Chains... at 93%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5ix0
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameHistone deacetylase 2, HDAC2
Ligand Name6EZ
EC.Number E.C.-.-.-.-
Resolution 1.72(Å)
Affinity (Kd/Ki/IC50)Ki=0.519uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Bioorg.Med.Chem. Vol. 24: pp. 4008-4015
Ligand Properties
Formula C20H21FN2O2
Molecular Weight 340.391
Exact Mass 340.159
No. of atoms 46
No. of bonds 49
Polar Surface Area 64.35
LOGP Value 3.07      (Computed with XLOGP3)
4.63      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q92769  
Entrez Gene IDNCBI Entrez Gene ID: 3066  
ASDInformation of known allosteric effects of PDB entries

 
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