Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5khh
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3otfRCSB PDB    PDBbind220aa, >3OTF_1|Chain... *
3u10RCSB PDB    PDBbind210aa, >3U10_1|Chain... at 90%
4hbnRCSB PDB    PDBbind205aa, >4HBN_1|Chain... at 99%
4nvpRCSB PDB    PDBbind209aa, >4NVP_1|Chain... at 97%
5khgRCSB PDB    PDBbind204aa, >5KHG_1|Chain... at 92%
5khiRCSB PDB    PDBbind204aa, >5KHI_1|Chain... at 92%
5khjRCSB PDB    PDBbind204aa, >5KHJ_1|Chains... at 92%
5khkRCSB PDB    PDBbind204aa, >5KHK_1|Chain... at 92%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5khh
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePotassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 (HCN2 CNBD)
Ligand Name6SW
EC.Number E.C.-.-.-.-
Resolution 1.77(Å)
Affinity (Kd/Ki/IC50)Kd=49.32uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Structure Vol. 24: pp. 1629-1642
Ligand Properties
Formula C10H12N4O7P
Molecular Weight 331.199
Exact Mass 331.044
No. of atoms 34
No. of bonds 37
Polar Surface Area 165.54
LOGP Value -2.88      (Computed with XLOGP3)
-1.54      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O88703  
Entrez Gene IDNCBI Entrez Gene ID: 15166  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com