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Related entries of code: 5km0
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5i2eRCSB PDB    PDBbind129aa, >5I2E_1|Chains... *
5i2fRCSB PDB    PDBbind129aa, >5I2F_1|Chains... at 100%
5ipcRCSB PDB    PDBbind129aa, >5IPC_1|Chains... at 99%
5klyRCSB PDB    PDBbind129aa, >5KLY_1|Chains... at 99%
5klzRCSB PDB    PDBbind129aa, >5KLZ_1|Chains... at 100%
5km1RCSB PDB    PDBbind129aa, >5KM1_1|Chains... at 100%
5km2RCSB PDB    PDBbind129aa, >5KM2_1|Chains... at 100%
5km3RCSB PDB    PDBbind129aa, >5KM3_1|Chains... at 100%
5kmaRCSB PDB    PDBbind129aa, >5KMA_1|Chains... at 99%
5wa8RCSB PDB    PDBbind129aa, >5WA8_1|Chains... at 99%
5wa9RCSB PDB    PDBbind129aa, >5WA9_1|Chains... at 99%
6n3yRCSB PDB    PDBbind129aa, >6N3Y_1|Chains... at 100%
6n3xRCSB PDB    PDBbind129aa, >6N3X_1|Chains... at 100%
6n3wRCSB PDB    PDBbind129aa, >6N3W_1|Chains... at 100%
6n3vRCSB PDB    PDBbind129aa, >6N3V_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1g9sRCSB PDB    PDBbindIMP
1p17RCSB PDB    PDBbindIMP
1p19RCSB PDB    PDBbindIMP
1qk4RCSB PDB    PDBbindIMP
1yfzRCSB PDB    PDBbindIMP
1z6dRCSB PDB    PDBbindIMP
5k1fRCSB PDB    PDBbindIMP
5kamRCSB PDB    PDBbindIMP
6mxdRCSB PDB    PDBbindIMP
6hgrRCSB PDB    PDBbindIMP

Entry Information
PDB ID5km0
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHistidine triad nucleotide-binding protein 1
Ligand NameIMP
EC.Number E.C.-.-.-.-
Resolution 1.53(Å)
Affinity (Kd/Ki/IC50)Kd=4.9uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Mol. Pharm. Vol. 14: pp. 3987-3997
Ligand Properties
Formula C10H14N4O8P
Molecular Weight 349.214
Exact Mass 349.055
No. of atoms 37
No. of bonds 39
Polar Surface Area 196.77
LOGP Value -3.96      (Computed with XLOGP3)
-2.59      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P49773  
Entrez Gene IDNCBI Entrez Gene ID: 3094  
ASDInformation of known allosteric effects of PDB entries

 
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