Browse entries in the PDBbind-CN Database

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Related entries of code: 5l17
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1bjiRCSB PDB    PDBbind388aa, >1BJI_1|Chain... at 94%
1f8bRCSB PDB    PDBbind388aa, >1F8B_1|Chain... at 94%
1f8cRCSB PDB    PDBbind388aa, >1F8C_1|Chain... at 94%
1f8dRCSB PDB    PDBbind388aa, >1F8D_1|Chain... at 94%
1f8eRCSB PDB    PDBbind388aa, >1F8E_1|Chain... at 94%
1nnbRCSB PDB    PDBbind387aa, >1NNB_1|Chain... at 94%
1xoeRCSB PDB    PDBbind387aa, >1XOE_1|Chain... at 94%
1xogRCSB PDB    PDBbind387aa, >1XOG_1|Chain... at 94%
2qwbRCSB PDB    PDBbind388aa, >2QWB_1|Chain... at 94%
2qwcRCSB PDB    PDBbind388aa, >2QWC_1|Chain... at 94%
2qwdRCSB PDB    PDBbind388aa, >2QWD_1|Chain... at 94%
2qweRCSB PDB    PDBbind388aa, >2QWE_1|Chain... at 94%
2qwfRCSB PDB    PDBbind388aa, >2QWF_1|Chain... at 94%
2qwgRCSB PDB    PDBbind388aa, >2QWG_1|Chain... at 94%
4dgrRCSB PDB    PDBbind389aa, >4DGR_1|Chain... at 94%
4mwqRCSB PDB    PDBbind388aa, >4MWQ_1|Chain... at 100%
4mwrRCSB PDB    PDBbind388aa, >4MWR_1|Chain... at 100%
4mwuRCSB PDB    PDBbind388aa, >4MWU_1|Chain... at 100%
4mwvRCSB PDB    PDBbind388aa, >4MWV_1|Chain... at 100%
4mwwRCSB PDB    PDBbind388aa, >4MWW_1|Chain... at 99%
4mwxRCSB PDB    PDBbind388aa, >4MWX_1|Chain... at 99%
4mwyRCSB PDB    PDBbind388aa, >4MWY_1|Chain... at 99%
4mx0RCSB PDB    PDBbind388aa, >4MX0_1|Chain... at 99%
5jyyRCSB PDB    PDBbind388aa, >5JYY_1|Chain... at 99%
5l15RCSB PDB    PDBbind397aa, >5L15_1|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1a4gRCSB PDB    PDBbindZMR
2f0zRCSB PDB    PDBbindZMR
2ya7RCSB PDB    PDBbindZMR
3ckzRCSB PDB    PDBbindZMR
3ti5RCSB PDB    PDBbindZMR
3ticRCSB PDB    PDBbindZMR
4b7nRCSB PDB    PDBbindZMR
4b7qRCSB PDB    PDBbindZMR
4cpzRCSB PDB    PDBbindZMR
4mwrRCSB PDB    PDBbindZMR
4mwxRCSB PDB    PDBbindZMR
6ekuRCSB PDB    PDBbindZMR
Entry Information
PDB ID5l17
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameNeuraminidase
Ligand NameZMR
EC.Number E.C.-.-.-.-
Resolution 2.4(Å)
Affinity (Kd/Ki/IC50)IC50=0.5nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) J. Infect. Dis. Vol. 216: pp. S566-S574
Ligand Properties
Formula C12H23N4O7
Molecular Weight 335.334
Exact Mass 335.157
No. of atoms 46
No. of bonds 46
Polar Surface Area 202.33
LOGP Value -0.61      (Computed with XLOGP3)
-4.04      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): R4NFR6  
Entrez Gene IDNCBI Entrez Gene ID: 23104238  
ASDInformation of known allosteric effects of PDB entries
 
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