Browse entries in the PDBbind-CN Database

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Related entries of code: 5m28
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5mk9RCSB PDB    PDBbind379aa, >5MK9_1|Chain... *
5mkaRCSB PDB    PDBbind379aa, >5MKA_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2gguRCSB PDB    PDBbindMLR
2gh9RCSB PDB    PDBbindMLR
3ckbRCSB PDB    PDBbindMLR
4ua8RCSB PDB    PDBbindMLR

Entry Information
PDB ID5m28
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameMalE1
Ligand NameMLR
EC.Number E.C.-.-.-.-
Resolution 1.08(Å)
Affinity (Kd/Ki/IC50)Kd=48uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Mol. Microbiol. Vol. 105: pp. 25-45
Ligand Properties
Formula C18H32O16
Molecular Weight 504.437
Exact Mass 504.169
No. of atoms 66
No. of bonds 68
Polar Surface Area 268.68
LOGP Value -6.88      (Computed with XLOGP3)
-7.57      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 11
No. of Hydrogen Bond Acceptors: 11
No. of Rotatable Bonds: 18
No. of Nitrogen and Oxygen Atoms: 16
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): B0L7B0  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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