Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5m7t
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5m7sRCSB PDB    PDBbind916aa, >5M7S_1|Chains... *
5m7uRCSB PDB    PDBbind916aa, >5M7U_1|Chains... at 100%
6pm9RCSB PDB    PDBbind388aa, >6PM9_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2j47RCSB PDB    PDBbindGDV

Entry Information
PDB ID5m7t
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameProtein O-GlcNAcase
Ligand NameGDV
EC.Number E.C.3.2.1.169
Resolution 2.6(Å)
Affinity (Kd/Ki/IC50)Ki=3.9uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Nat. Chem. Biol. Vol. 13: pp. 610-612
Ligand Properties
Formula C17H20N4O5
Molecular Weight 360.365
Exact Mass 360.143
No. of atoms 46
No. of bonds 48
Polar Surface Area 136.71
LOGP Value -1.26      (Computed with XLOGP3)
0.05      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O60502  
Entrez Gene IDNCBI Entrez Gene ID: 10724  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com