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Related entries of code: 5mi7
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2j47RCSB PDB    PDBbind716aa, >2J47_1|Chain... at 100%
2j4gRCSB PDB    PDBbind715aa, >2J4G_1|Chains... at 100%
2jiwRCSB PDB    PDBbind716aa, >2JIW_1|Chains... at 99%
2vvnRCSB PDB    PDBbind737aa, >2VVN_1|Chains... *
2vvsRCSB PDB    PDBbind737aa, >2VVS_1|Chain... at 100%
2w4xRCSB PDB    PDBbind716aa, >2W4X_1|Chain... at 100%
2w66RCSB PDB    PDBbind716aa, >2W66_1|Chains... at 100%
2w67RCSB PDB    PDBbind716aa, >2W67_1|Chains... at 100%
2wcaRCSB PDB    PDBbind716aa, >2WCA_1|Chain... at 100%
2xj7RCSB PDB    PDBbind716aa, >2XJ7_1|Chains... at 100%
2xm1RCSB PDB    PDBbind716aa, >2XM1_1|Chains... at 100%
2xm2RCSB PDB    PDBbind716aa, >2XM2_1|Chains... at 100%
5abeRCSB PDB    PDBbind726aa, >5ABE_1|Chains... at 98%
5abfRCSB PDB    PDBbind726aa, >5ABF_2|Chain... at 98%
5abgRCSB PDB    PDBbind726aa, >5ABG_1|Chains... at 98%
5abhRCSB PDB    PDBbind726aa, >5ABH_1|Chains... at 98%
5fkyRCSB PDB    PDBbind716aa, >5FKY_1|Chains... at 100%
5fl0RCSB PDB    PDBbind716aa, >5FL0_1|Chains... at 100%
5fl1RCSB PDB    PDBbind716aa, >5FL1_1|Chains... at 100%
5mi5RCSB PDB    PDBbind727aa, >5MI5_1|Chain... at 97%
5mi6RCSB PDB    PDBbind727aa, >5MI6_1|Chain... at 97%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2cbjRCSB PDB    PDBbindOAN
2oxnRCSB PDB    PDBbindOAN
2vcbRCSB PDB    PDBbindOAN
2vvsRCSB PDB    PDBbindOAN
3ozpRCSB PDB    PDBbindOAN
3s6tRCSB PDB    PDBbindOAN
3sutRCSB PDB    PDBbindOAN
4az6RCSB PDB    PDBbindOAN
4azbRCSB PDB    PDBbindOAN
4azgRCSB PDB    PDBbindOAN
4aziRCSB PDB    PDBbindOAN
5a6bRCSB PDB    PDBbindOAN
5mi5RCSB PDB    PDBbindOAN
Entry Information
PDB ID5mi7
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameO-GlcNAcase BT_4395
Ligand NameOAN
EC.Number E.C.3.2.1.169
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Kd=77nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Chem Sci Vol. 8: pp. 7772-7779
Ligand Properties
Formula C15H19N3O7
Molecular Weight 353.327
Exact Mass 353.122
No. of atoms 44
No. of bonds 45
Polar Surface Area 149.71
LOGP Value -0.28      (Computed with XLOGP3)
-0.37      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q89ZI2  
Entrez Gene IDNCBI Entrez Gene ID: 60925570  
ASDInformation of known allosteric effects of PDB entries
 
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