Browse entries in the PDBbind-CN Database

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Related entries of code: 5npc
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4b9zRCSB PDB    PDBbind817aa, >4B9Z_1|Chain... at 97%
5i23RCSB PDB    PDBbind836aa, >5I23_1|Chain... *
5i24RCSB PDB    PDBbind836aa, >5I24_1|Chain... at 100%
5npbRCSB PDB    PDBbind836aa, >5NPB_1|Chain... at 100%
5npdRCSB PDB    PDBbind835aa, >5NPD_1|Chain... at 99%
5npeRCSB PDB    PDBbind836aa, >5NPE_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5npc
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameOligosaccharide 4-alpha-D-glucosyltransferase
Ligand Name94E
EC.Number E.C.2.4.1.161
Resolution 1.96(Å)
Affinity (Kd/Ki/IC50)IC50>100uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) ACS Cent Sci Vol. 3: pp. 784-793
Ligand Properties
Formula C7H12O8S
Molecular Weight 256.230
Exact Mass 256.025
No. of atoms 28
No. of bonds 29
Polar Surface Area 141.9
LOGP Value -2.35      (Computed with XLOGP3)
-2.20      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): B3PEE6  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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