Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5u6c
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3bprRCSB PDB    PDBbind313aa, >3BPR_1|Chains... at 98%
3tcpRCSB PDB    PDBbind313aa, >3TCP_1|Chains... at 98%
4m3qRCSB PDB    PDBbind313aa, >4M3Q_1|Chains... at 98%
4mh7RCSB PDB    PDBbind313aa, >4MH7_1|Chains... at 98%
4mhaRCSB PDB    PDBbind313aa, >4MHA_1|Chains... at 98%
5k0xRCSB PDB    PDBbind313aa, >5K0X_1|Chains... at 98%
5tc0RCSB PDB    PDBbind314aa, >5TC0_1|Chains... at 98%
5td2RCSB PDB    PDBbind285aa, >5TD2_1|Chains... at 100%
6mepRCSB PDB    PDBbind313aa, >6MEP_1|Chains... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5u6bRCSB PDB    PDBbind7YS

Entry Information
PDB ID5u6c
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameTyrosine-protein kinase Mer
Ligand Name7YS
EC.Number E.C.-.-.-.-
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Ki<0.05nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) J. Biol. Chem. Vol. 292: pp. 15705-15716
Ligand Properties
Formula C21H22ClFN6O3
Molecular Weight 460.889
Exact Mass 460.143
No. of atoms 54
No. of bonds 57
Polar Surface Area 119.39
LOGP Value 1.05      (Computed with XLOGP3)
3.26      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q12866  
Entrez Gene IDNCBI Entrez Gene ID: 10461  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com