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Related entries of code: 5v5d
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3njqRCSB PDB    PDBbind193aa, >3NJQ_2|Chain... at 100%
4p2tRCSB PDB    PDBbind194aa, >4P2T_1|Chains... *
4p3hRCSB PDB    PDBbind193aa, >4P3H_1|Chains... at 100%
5v5eRCSB PDB    PDBbind193aa, >5V5E_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5v5d
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameKaposi's sarcoma-associated herpesvirus protease
Ligand Name8OY
EC.Number E.C.-.-.-.-
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)IC50=5.4uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) J. Am. Chem. Soc. Vol. 139: pp. 11650-11653
Ligand Properties
Formula C26H27N3O3
Molecular Weight 429.511
Exact Mass 429.205
No. of atoms 59
No. of bonds 62
Polar Surface Area 91.32
LOGP Value 7.21      (Computed with XLOGP3)
6.04      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O40922  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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