Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5vfd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3fv7RCSB PDB    PDBbind244aa, >3FV7_1|Chain... at 100%
3fyzRCSB PDB    PDBbind244aa, >3FYZ_1|Chain... at 100%
3fzcRCSB PDB    PDBbind244aa, >3FZC_1|Chain... at 100%
3mbzRCSB PDB    PDBbind244aa, >3MBZ_1|Chain... at 100%
4wm9RCSB PDB    PDBbind245aa, >4WM9_1|Chain... *
5tg4RCSB PDB    PDBbind245aa, >5TG4_1|Chain... at 98%
5tg5RCSB PDB    PDBbind245aa, >5TG5_1|Chain... at 99%
5tg6RCSB PDB    PDBbind245aa, >5TG6_1|Chain... at 99%
5tg7RCSB PDB    PDBbind245aa, >5TG7_1|Chain... at 99%
6b22RCSB PDB    PDBbind244aa, >6B22_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5vfd
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameOXA-24
Ligand Name9CM
EC.Number E.C.-.-.-.-
Resolution 1.93(Å)
Affinity (Kd/Ki/IC50)IC50=0.36uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Nat Microbiol Vol. 2: pp. 17104-17104
Ligand Properties
Formula C8H10N3O6S
Molecular Weight 276.247
Exact Mass 276.029
No. of atoms 28
No. of bonds 29
Polar Surface Area 159.17
LOGP Value -1.96      (Computed with XLOGP3)
0.17      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8RLA6  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com