Browse entries in the PDBbind-CN Database

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Related entries of code: 5zt1
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5ybiRCSB PDB    PDBbind368aa, >5YBI_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1njfRCSB PDB    PDBbindAGS
1xxhRCSB PDB    PDBbindAGS
3hu1RCSB PDB    PDBbindAGS
3hu2RCSB PDB    PDBbindAGS
3hu3RCSB PDB    PDBbindAGS
4klnRCSB PDB    PDBbindAGS
4ko8RCSB PDB    PDBbindAGS
5mtvRCSB PDB    PDBbindAGS
6jdlRCSB PDB    PDBbindAGS
6jdiRCSB PDB    PDBbindAGS
6j7eRCSB PDB    PDBbindAGS
6bs4RCSB PDB    PDBbindAGS

Entry Information
PDB ID5zt1
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namesurface presentation antigens 47
Ligand NameAGS
EC.Number E.C.-.-.-.-
Resolution 3.11(Å)
Affinity (Kd/Ki/IC50)Kd=21.23uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Front Microbiol Vol. 9: pp. 1468-1468
Ligand Properties
Formula C10H18N5O12P3S
Molecular Weight 525.263
Exact Mass 524.989
No. of atoms 49
No. of bonds 51
Polar Surface Area 337.46
LOGP Value -4.18      (Computed with XLOGP3)
-1.16      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 11
No. of Rotatable Bonds: 12
No. of Nitrogen and Oxygen Atoms: 17
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0A1C1  
Entrez Gene IDNCBI Entrez Gene ID: 1237998  
ASDInformation of known allosteric effects of PDB entries

 
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