Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 6c9n
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4pvvRCSB PDB    PDBbind324aa, >4PVV_1|Chain... at 99%
6c9vRCSB PDB    PDBbind324aa, >6C9V_1|Chains... at 100%
6c9sRCSB PDB    PDBbind324aa, >6C9S_1|Chains... at 100%
6c9rRCSB PDB    PDBbind337aa, >6C9R_1|Chains... *
6c9qRCSB PDB    PDBbind331aa, >6C9Q_1|Chain... at 99%
6c9pRCSB PDB    PDBbind324aa, >6C9P_1|Chains... at 100%
6c67RCSB PDB    PDBbind324aa, >6C67_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3nynRCSB PDB    PDBbindSGV
5aqzRCSB PDB    PDBbindSGV

Entry Information
PDB ID6c9n
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameAdenosine kinase
Ligand NameSGV
EC.Number E.C.2.7.1.20
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)IC50=16.5uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference () Vol. : pp. -
Ligand Properties
Formula C12H15N5O5
Molecular Weight 309.278
Exact Mass 309.107
No. of atoms 37
No. of bonds 39
Polar Surface Area 169.74
LOGP Value -2.47      (Computed with XLOGP3)
-0.99      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P9WID5  
Entrez Gene IDNCBI Entrez Gene ID: 45426178  888551  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com