Browse entries in the PDBbind-CN Database

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Related entries of code: 6e7m
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4edeRCSB PDB    PDBbind133aa, >4EDE_1|Chains... *
4eejRCSB PDB    PDBbind133aa, >4EEJ_1|Chains... at 98%
4efgRCSB PDB    PDBbind133aa, >4EFG_1|Chains... at 99%
4exzRCSB PDB    PDBbind133aa, >4EXZ_1|Chains... at 94%
4gkcRCSB PDB    PDBbind133aa, >4GKC_1|Chains... at 98%
4ruuRCSB PDB    PDBbind133aa, >4RUU_1|Chains... at 95%
6e5sRCSB PDB    PDBbind133aa, >6E5S_1|Chains... at 94%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2g79RCSB PDB    PDBbindRET
3hx3RCSB PDB    PDBbindRET
3hy5RCSB PDB    PDBbindRET
4cizRCSB PDB    PDBbindRET
4edeRCSB PDB    PDBbindRET
4eejRCSB PDB    PDBbindRET
4efgRCSB PDB    PDBbindRET
4exzRCSB PDB    PDBbindRET
4gkcRCSB PDB    PDBbindRET
4i9rRCSB PDB    PDBbindRET
4i9sRCSB PDB    PDBbindRET
4ruuRCSB PDB    PDBbindRET
6e5sRCSB PDB    PDBbindRET

Entry Information
PDB ID6e7m
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameRetinol-binding protein 2 (Q108K:T51D:A28C mutant)
Ligand NameRET
EC.Number E.C.-.-.-.-
Resolution 2.7(Å)
Affinity (Kd/Ki/IC50)Kd=221nM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Am.Chem.Soc. Vol. 141: pp. 17125-17132
Ligand Properties
Formula C20H32
Molecular Weight 272.468
Exact Mass 272.250
No. of atoms 52
No. of bonds 52
Polar Surface Area 0
LOGP Value 7.92      (Computed with XLOGP3)
6.47      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 0
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 0
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P50120  
Entrez Gene IDNCBI Entrez Gene ID: 5948  
ASDInformation of known allosteric effects of PDB entries

 
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