Browse entries in the PDBbind-CN Database

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Related entries of code: 6eq1
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6epyRCSB PDB    PDBbind683aa, >6EPY_1|Chains... *
6epzRCSB PDB    PDBbind683aa, >6EPZ_1|Chains... at 100%
6eq8RCSB PDB    PDBbind683aa, >6EQ8_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6eq1
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamePeriplasmic alpha-galactoside-binding protein
Ligand NameSTW
EC.Number E.C.-.-.-.-
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Kd=24.6uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) J. Biol. Chem. Vol. 293: pp. 7930-7941
Ligand Properties
Formula C24H42O21
Molecular Weight 666.578
Exact Mass 666.222
No. of atoms 87
No. of bonds 90
Polar Surface Area 347.83
LOGP Value -8.17      (Computed with XLOGP3)
-9.75      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 14
No. of Hydrogen Bond Acceptors: 14
No. of Rotatable Bonds: 25
No. of Nitrogen and Oxygen Atoms: 21
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A0A083ZM57  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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