Browse entries in the PDBbind-CN Database

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Related entries of code: 6jao
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6jbeRCSB PDB    PDBbind408aa, >6JBE_1|Chain... at 99%
6jbbRCSB PDB    PDBbind408aa, >6JBB_1|Chain... at 99%
6jb4RCSB PDB    PDBbind408aa, >6JB4_1|Chain... at 99%
6jb0RCSB PDB    PDBbind408aa, >6JB0_1|Chain... at 99%
6jaqRCSB PDB    PDBbind408aa, >6JAQ_1|Chain... at 99%
6japRCSB PDB    PDBbind408aa, >6JAP_1|Chain... at 99%
6janRCSB PDB    PDBbind408aa, >6JAN_1|Chain... at 99%
6jamRCSB PDB    PDBbind408aa, >6JAM_1|Chain... at 99%
6jagRCSB PDB    PDBbind408aa, >6JAG_1|Chain... at 100%
6jadRCSB PDB    PDBbind408aa, >6JAD_1|Chain... at 100%
6j9yRCSB PDB    PDBbind408aa, >6J9Y_1|Chain... at 100%
6j9wRCSB PDB    PDBbind408aa, >6J9W_1|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1d09RCSB PDB    PDBbindPAL
1q95RCSB PDB    PDBbindPAL
5g1nRCSB PDB    PDBbindPAL

Entry Information
PDB ID6jao
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namealpha-glycoside-binding protein
Ligand NamePAL
EC.Number E.C.-.-.-.-
Resolution 1.77(Å)
Affinity (Kd/Ki/IC50)Kd=13.8uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Febs J. Vol. : pp. -
Ligand Properties
Formula C12H22O11
Molecular Weight 342.296
Exact Mass 342.116
No. of atoms 45
No. of bonds 46
Polar Surface Area 189.53
LOGP Value -4.43      (Computed with XLOGP3)
-5.40      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 8
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 13
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q5SLD7  
Entrez Gene IDNCBI Entrez Gene ID: 3169332  
ASDInformation of known allosteric effects of PDB entries

 
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