Browse entries in the PDBbind-CN Database

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Related entries of code: 6mck
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3cf1RCSB PDB    PDBbind806aa, >3CF1_1|Chains... *
3hu1RCSB PDB    PDBbind489aa, >3HU1_1|Chains... at 98%
3hu2RCSB PDB    PDBbind489aa, >3HU2_1|Chains... at 98%
3hu3RCSB PDB    PDBbind489aa, >3HU3_1|Chains... at 98%
4klnRCSB PDB    PDBbind489aa, >4KLN_1|Chains... at 98%
4ko8RCSB PDB    PDBbind489aa, >4KO8_1|Chains... at 98%
4kodRCSB PDB    PDBbind489aa, >4KOD_1|Chains... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6mck
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameTransitional endoplasmic reticulum ATPase
Ligand NameJDP
EC.Number E.C.-.-.-.-
Resolution 3.77(Å)
Affinity (Kd/Ki/IC50)IC50=0.012uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Mol. Pharmacol. Vol. 95: pp. 286-293
Ligand Properties
Formula C24H23N5O2
Molecular Weight 413.472
Exact Mass 413.185
No. of atoms 54
No. of bonds 58
Polar Surface Area 95.06
LOGP Value 3.08      (Computed with XLOGP3)
4.29      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P55072  
Entrez Gene IDNCBI Entrez Gene ID: 7415  
ASDInformation of known allosteric effects of PDB entries

 
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