Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 6qdx
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6qe5RCSB PDB    PDBbind300aa, >6QE5_1|Chains... *
6qe0RCSB PDB    PDBbind283aa, >6QE0_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6qdx
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameRibosomal RNA large subunit methyltransferase J, E.coli RlmJ
Ligand NameHY8
EC.Number E.C.2.1.1.266
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Kd=30uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Rna Biol. Vol. 16: pp. 798-808
Ligand Properties
Formula C27H40N12O9
Molecular Weight 676.681
Exact Mass 676.304
No. of atoms 88
No. of bonds 93
Polar Surface Area 314.24
LOGP Value -4.64      (Computed with XLOGP3)
-5.09      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 9
No. of Hydrogen Bond Acceptors: 13
No. of Rotatable Bonds: 18
No. of Nitrogen and Oxygen Atoms: 21
No. of Rings: 6
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P37634  
Entrez Gene IDNCBI Entrez Gene ID: 948012  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com