Browse entries in the PDBbind-CN Database

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Related entries of code: 2rib
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2gguRCSB PDB    PDBbind160aa, >2GGU_1|Chains... *
2ggxRCSB PDB    PDBbind160aa, >2GGX_1|Chains... at 100%
2orkRCSB PDB    PDBbind160aa, >2ORK_1|Chains... at 100%
2os9RCSB PDB    PDBbind160aa, >2OS9_1|Chains... at 100%
2riaRCSB PDB    PDBbind160aa, >2RIA_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID2rib
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePulmonary surfactant-associated protein D
Ligand NameGMH
EC.Number E.C.-.-.-.-
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)IC50=1.5mM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) Biochemistry Vol. 47: pp. 710-720
Ligand Properties
Formula C7H14O7
Molecular Weight 210.182
Exact Mass 210.074
No. of atoms 28
No. of bonds 28
Polar Surface Area 130.61
LOGP Value -3.21      (Computed with XLOGP3)
-3.86      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P35247  
Entrez Gene IDNCBI Entrez Gene ID: 6441  
ASDInformation of known allosteric effects of PDB entries

 
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