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Related entries of code: 2z4y
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2e91RCSB PDB    PDBbind340aa, >2E91_1|Chains... *
2e92RCSB PDB    PDBbind340aa, >2E92_1|Chains... at 100%
2e93RCSB PDB    PDBbind340aa, >2E93_1|Chains... at 100%
2e94RCSB PDB    PDBbind340aa, >2E94_1|Chains... at 100%
2e95RCSB PDB    PDBbind340aa, >2E95_1|Chains... at 100%
2z4wRCSB PDB    PDBbind340aa, >2Z4W_1|Chains... at 100%
2z4zRCSB PDB    PDBbind340aa, >2Z4Z_1|Chains... at 100%
2z50RCSB PDB    PDBbind340aa, >2Z50_1|Chains... at 100%
2z52RCSB PDB    PDBbind340aa, >2Z52_1|Chains... at 100%
2z78RCSB PDB    PDBbind340aa, >2Z78_1|Chains... at 100%
2z7hRCSB PDB    PDBbind340aa, >2Z7H_1|Chains... at 100%
2z7iRCSB PDB    PDBbind340aa, >2Z7I_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID2z4y
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameGeranylgeranyl pyrophosphate synthetase
Ligand Name252
EC.Number E.C.2.5.1.30
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)IC50=0.71uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) J.Med.Chem. Vol. 51: pp. 5594-5607
Ligand Properties
Formula C9H24O7P2
Molecular Weight 306.230
Exact Mass 306.100
No. of atoms 42
No. of bonds 41
Polar Surface Area 168.79
LOGP Value -0.40      (Computed with XLOGP3)
0.86      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q12051  
Entrez Gene IDNCBI Entrez Gene ID: 856036  
ASDInformation of known allosteric effects of PDB entries

 
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