Browse entries in the PDBbind-CN Database

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Related entries of code: 3ldw
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3rbmRCSB PDB    PDBbind396aa, >3RBM_1|Chains... at 100%
3rywRCSB PDB    PDBbind396aa, >3RYW_1|Chains... at 100%
5hn7RCSB PDB    PDBbind375aa, >5HN7_1|Chains... at 100%
5hn8RCSB PDB    PDBbind375aa, >5HN8_1|Chains... at 100%
5hn9RCSB PDB    PDBbind375aa, >5HN9_1|Chains... at 100%
5hnaRCSB PDB    PDBbind375aa, >5HNA_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2e91RCSB PDB    PDBbindZOL
2f9kRCSB PDB    PDBbindZOL

Entry Information
PDB ID3ldw
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameFarnesyl pyrophosphate synthase, PvGGPPS
Ligand NameZOL
EC.Number E.C.-.-.-.-
Resolution 2.47(Å)
Affinity (Kd/Ki/IC50)Ki=10.7nM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference (2011) J.Biol.Chem. Vol. 286: pp. 3315-3322
Ligand Properties
Formula C5H12N2O7P2
Molecular Weight 274.106
Exact Mass 274.012
No. of atoms 28
No. of bonds 28
Polar Surface Area 186.61
LOGP Value -4.64      (Computed with XLOGP3)
-1.99      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A5K4U6  
Entrez Gene IDNCBI Entrez Gene ID: 5474697  
ASDInformation of known allosteric effects of PDB entries

 
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