Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 6aeh
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6ipmRCSB PDB    PDBbind356aa, >6IPM_1|Chain... at 100%
6iplRCSB PDB    PDBbind356aa, >6IPL_1|Chain... at 100%
6ipkRCSB PDB    PDBbind356aa, >6IPK_1|Chain... at 100%
6ipjRCSB PDB    PDBbind356aa, >6IPJ_1|Chain... at 100%
6ipiRCSB PDB    PDBbind356aa, >6IPI_1|Chain... at 100%
6iphRCSB PDB    PDBbind356aa, >6IPH_1|Chain... at 100%
6ak9RCSB PDB    PDBbind356aa, >6AK9_1|Chain... at 100%
6ak8RCSB PDB    PDBbind356aa, >6AK8_1|Chain... at 100%
6ak6RCSB PDB    PDBbind356aa, >6AK6_1|Chain... at 100%
6aecRCSB PDB    PDBbind356aa, >6AEC_1|Chain... *
6ak5RCSB PDB    PDBbind356aa, >6AK5_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4lilRCSB PDB    PDBbindUTP
6czbRCSB PDB    PDBbindUTP

Entry Information
PDB ID6aeh
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDNA-directed DNA/RNA polymerase mu
Ligand NameUTP
EC.Number E.C.2.7.7.7
Resolution 1.64(Å)
Affinity (Kd/Ki/IC50)Kd=1.77uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Am.Chem.Soc. Vol. 141: pp. 8489-8502
Ligand Properties
Formula C9H18N2O15P3
Molecular Weight 487.165
Exact Mass 486.992
No. of atoms 47
No. of bonds 48
Polar Surface Area 314.62
LOGP Value -6.47      (Computed with XLOGP3)
-3.82      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 11
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 17
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9NP87  
Entrez Gene IDNCBI Entrez Gene ID: 27434  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com