Browse entries in the PDBbind-CN Database

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Related entries of code: 6ipj
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6ipmRCSB PDB    PDBbind356aa, >6IPM_1|Chain... at 100%
6iplRCSB PDB    PDBbind356aa, >6IPL_1|Chain... at 100%
6ipkRCSB PDB    PDBbind356aa, >6IPK_1|Chain... at 100%
6ipiRCSB PDB    PDBbind356aa, >6IPI_1|Chain... at 100%
6iphRCSB PDB    PDBbind356aa, >6IPH_1|Chain... at 100%
6ak9RCSB PDB    PDBbind356aa, >6AK9_1|Chain... at 100%
6ak8RCSB PDB    PDBbind356aa, >6AK8_1|Chain... at 100%
6ak6RCSB PDB    PDBbind356aa, >6AK6_1|Chain... at 100%
6aehRCSB PDB    PDBbind356aa, >6AEH_1|Chain... at 100%
6aecRCSB PDB    PDBbind356aa, >6AEC_1|Chain... *
6ak5RCSB PDB    PDBbind356aa, >6AK5_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1h79RCSB PDB    PDBbindTTP
1oe0RCSB PDB    PDBbindTTP
1zm7RCSB PDB    PDBbindTTP
2j4qRCSB PDB    PDBbindTTP
2j87RCSB PDB    PDBbindTTP
4uxjRCSB PDB    PDBbindTTP
5c2oRCSB PDB    PDBbindTTP
6czcRCSB PDB    PDBbindTTP
Entry Information
PDB ID6ipj
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDNA-directed DNA/RNA polymerase mu
Ligand NameTTP
EC.Number E.C.2.7.7.7
Resolution 1.98(Å)
Affinity (Kd/Ki/IC50)Kd=1.62uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Am.Chem.Soc. Vol. 141: pp. 8489-8502
Ligand Properties
Formula C10H20N2O14P3
Molecular Weight 485.192
Exact Mass 485.013
No. of atoms 49
No. of bonds 50
Polar Surface Area 294.39
LOGP Value -5.12      (Computed with XLOGP3)
-2.48      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 10
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 16
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9NP87  
Entrez Gene IDNCBI Entrez Gene ID: 27434  
ASDInformation of known allosteric effects of PDB entries
 
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